1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagacccaaacagccgaaaatctttagcctgcctgcgtgcgtgcctgcctgcatgttttaactgaaagatttgcacattttttgggggtatatacatacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGG
species | Zea mays |
transcript | GRMZM2G470499_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTEST: gi|101401541|gb|EB822450.1|EB822450
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
EST: TGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAAGCCAA-G GTTGCAGATTTCEST: gi|71315889|gb|DR794631.1|DR794631
genomic: TGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGA-GCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTC
EST: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTEST: gi|71430040|gb|DR811090.1|DR811090
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
EST: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTEST: gi|149012054|gb|EE042472.2|EE042472
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
EST: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAG GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
genomic: GTGACATCAAAGCGGCGAACATCCTTCTGGATTACCATTACGAGCCAAAGgtagacccaa ... atacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTT
gcatgttttaactgaaagatttgcacattttttgggggtatatacatacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGG
ttttaac putative branch site (score: 2)
tatatacatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagacccaaacagccgaaaatctttagcctgcctgcgtgcgtgcctgcctgcatgttttaactgaaagatttgcacattttttgggggtatatacatacattcagGTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG