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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctccatgttccatatatgtctaataacttgtatttatattaggactcactttttctgggaaaatatatacatggtcttatttgtaatctctaattacattgcatagtgtaattgataataatttttctttggaatcaaatgaagATACTTGGAGTGTACGATTGGTCGGGAAATAATCCAATTTTCCCTGAACTATGGCTATCTCCCCAATTTCTTCCATTTCATCCAG

Basic information

species Zea mays
transcript GRMZM2G468929_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G468929_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g04760.1 (Oryza sativa), 3'ss of exon 3
gtatgctccatgttccatatatgtctaataacttgtatttatattaggactcactttttctgggaaaatatatacatggtcttatttgta-atctctaattacattgcatagtgtaattgataataatttttctttggaatcaaatgaagATACTTGGAGTGTACGATTGGTCGGGAAATAATCCAATTTTCCCTGAACTATGGCTATCTCCCCAATTTCTTCCATTTCATCCAG
                                          ||| || |  ||||     |  ||| | ||   |||     | |   |   ||   | || |  || | |  | |||    | || ||   ||    ||  | |  ||||||||||||||||||| ||| | ||||| || || || |||||||| ||||||||  | || ||||||||||| ||||||||||
------------------------------------------atttgggccaactt-----gacaaagtttaattatgaaaaaaatcaaacgacttataatataacgcgttgattgatttcggacaaattaattt---gattcactacagATACTTGGAGTGTACGAGTGGGCAGGAAACAACCCCATCTTCCCTGAGCTATGGCTGACCCCACAATTTCTTCCTTTTCATCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaattacattgcatagtgtaattgataataatttttctttggaatcaaatgaagATACTTGGAGTGTACGATTGGTCGGGAAATAATCCAATTTTCCCTGAACTATGGCTATCTCCCCAATTTCTTCCATTTCATCCAG
             atagtgtaattgataa  TA-rich tract