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gtaagtaaagttttcaatacatacgaaatggtcctgtattgttcttatatatataatatatgtgcaagtttttcctttcttgatgatcatagtactacactactaataattcagaaagtttgagcattattattgcttccattctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTCATGGACTGCTTCTCTTTCTTTATCAG
species | Zea mays |
transcript | GRMZM2G466281_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCGCCCCCCAGATGGGTTCAEST: gi|101388019|gb|EB816024.1|EB816024
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCA
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|76933447|gb|DV173462.1|DV173462
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|78108358|gb|DV526776.1|DV526776
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|76284393|gb|DV023961.1|DV023961
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|211250321|gb|FL201844.1|FL201844
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATEST: gi|148930548|gb|EE285169.2|EE285169
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGAT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|148948015|gb|EC893516.2|EC893516
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|211250319|gb|FL201842.1|FL201842
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|149085392|gb|EE174899.2|EE174899
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|88756189|gb|DY540330.1|DY540330
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|88756155|gb|DY540296.1|DY540296
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTEST: gi|211250316|gb|FL201839.1|FL201839
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
EST: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT TTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
genomic: TTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTgtaagtaaag ... ctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCT
actactaataattcagaaagtttgagcattattattgcttccattctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTCATGGACTGCTTCTCTTTCTTTATCAG
tactaat putative branch site (score: 1)
cttccattct putative PPT
taataattcagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaagttttcaatacatacgaaatggtcctgtattgttcttatatatataatatatgtgcaagtttttcctttcttgatgatcatagtactacactactaataattcagaaagtttgagcattattattgcttccattctacgtgcagTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTTCACCTTGCTCATGGACTGCTTCTCTTTCTTTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA