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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG

Basic information

species Zea mays
transcript GRMZM2G464137_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G464137_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g57400.1 (Oryza sativa), 3'ss of exon 3
gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG
|||| || ||  |   ||| |||  || |    | | | |||| |||   ||  |||  ||  ||    |    | ||| ||  ||||||||||| |||||||| || |||||  ||||||||||||||||||||||||| |||||||||||   || ||| |||||||| ||||||||||||||||  
gtaactatctttccagatt-aaaccagcg----cttttcttttcttttcatat-tggagatgatggacat----gatttgcatatgcagGTTTATTGAGAGAGCACAGGCTCTTCTTCATGGAGATCTCCACACTGGTTCCATCATGGTGACACCAGATTCTACTCAAGTGATTGATCCAGAATTTGCT

upper sequence: GRMZM2G464137_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g57410.1 (Oryza sativa), 3'ss of exon 3
gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG
|||| || ||| |   ||| |||  || |      | | |||  |||   |   |||  ||  ||    |    | ||| ||  ||||||||||| |||||||| |||||| |  |||||||||||||||||||| |||| |||||||||||   || ||| |||||||| ||||||||||||||||  
gtaactagctctcctgatt-aaaccagcg----tttctctttccttttcat---tggagatgatggacat----gatttgcatatgcagGTTTATTGAGAGAGCACAAGCTTTTCTTCATGGAGATCTCCACACTAGTTCCATCATGGTGACACCAGATTCTACTCAAGTGATTGATCCAGAATTTGCT

upper sequence: GRMZM2G464137_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G45520.1 (Glycine max), 3'ss of exon 3
gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG
|| | | ||| | |||| | || | | ||  |  | |  |||   |||| |     |||    ||  ||||             ||||   || | | || | ||||     ||  |      |  |||   || |  |   ||||    ||| ||                                 
gttact-cctgaatgaactcaagtcattgatc--cagAATTTGCATTCTAT-----GGACCAATGGGTTTTGACA-----TGGGTGCA---TTCTTGGGAAACCTCA--TCTTGGCTTTCTATG--CTCAGGACGGACTTGTTCAT--CAACCCAA---------------------------------

upper sequence: GRMZM2G464137_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G40730.1 (Glycine max), 3'ss of exon 3
--gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG
   | ||||| |||||   ||  |   | |     |    ||||||||  |  |  |     || |     ||| || |      ||| ||||| || ||||| || || || || || ||||||||||| |||||||||||| | ||||| |||   |  ||||||||||| ||||||||||||||||  
gtattattac-tcacttttttttacccattatatgcagtagttttgttgttagattttttctttataggaatttatgttc-----ctgtagGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCA

upper sequence: GRMZM2G464137_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT1G49820.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG
|||  |   |  || | ||     || |  || | |  | |||| |   |||  |  |||     |    || ||  ||        |||||    || |||||||||||| | || ||||| ||||| || ||||||||| ||||||| ||  ||| |||||| ||||| || |||||||| |||  |
gtatgtgtttt-ctcatttcccggtaatttccgc-taggatttgcta--gtatctctgaaccacca----ttgtgtattatgttgttagGTTCTGTGAAAGAGCTCAAGCTTTAATACATGGTGATCTTCATACTGGTTCTGTCATGGTTACTCAAGATTCAACGCAAGTTATAGATCCAGAGTTTTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76925788|gb|DV170594.1|DV170594
EST:     TTCGCGAGGATGATGAGCTNCA-GTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: TTCGCGAGGATGATGAGCT-CAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|148931973|gb|EC875233.2|EC875233
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGGAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|148962543|gb|EE013418.2|EE013418
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|71432514|gb|DR813564.1|DR813564
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|148969592|gb|EE020430.2|EE020430
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCTACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|32929857|gb|CF034669.1|CF034669
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|76913361|gb|DV165093.1|DV165093
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGA
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGA
EST: gi|76292759|gb|DV032327.1|DV032327
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTNCA-GCTCTGATTCATGGAGATCTCCACACTGGTT
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCT-CAAGCTCTGATTCATGGAGATCTCCACACTGGTT
EST: gi|78114422|gb|DV532811.1|DV532811
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCCCACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|149048896|gb|EE048395.2|EE048395
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|32929601|gb|CF034413.1|CF034413
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|32928909|gb|CF033721.1|CF033721
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|148938568|gb|EC882889.2|EC882889
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGGTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|149080185|gb|EE169203.2|EE169203
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTC
EST: gi|149100125|gb|EE186180.2|EE186180
EST:     GTTCGCGAGGATGATGAGCTCANGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAGC
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAGC
EST: gi|71430317|gb|DR811367.1|DR811367
EST:     GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGAT                         GTTTATCGAGAGAG
genomic: GTTCGCGAGGATGATGAGCTCAAGTTGGAAGTAGCTGGGCTGAAATCGATgtaattacct ... ccaactgcagGTTTATCGAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG
                                ctttttttggtttcc  CT-rich tract
                               acttttttt  TA-rich tract