1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcaagacctttttatcaacagtttggttgcccttatactgtcttcaccactgcactgatcgctttgtgtgtgtgtgtgtgtttcttttcatccaggcagGCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGACAAAGATCAGTCTTCTTAAATTTGCTCACTTCACAGTCGTAGTTTCACACCA
species | Zea mays |
transcript | GRMZM2G463267_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAG GCAGGCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGEST: gi|50335485|gb|CO530611.1|CO530611
genomic: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAGgtccgcatga ... atccaggcagGC-G---ATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAG
EST: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAG GCAGGCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGEST: gi|74234643|gb|DT642557.1|DT642557
genomic: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAGgtccgcatga ... atccaggcagGC-G---ATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAG
EST: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAGGCAGEST: gi|78110866|gb|DV529264.1|DV529264
genomic: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGT-C---CAGgtccgcatga ... atccagg
EST: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAG GCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGACAAEST: gi|78106029|gb|DV524447.1|DV524447
genomic: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAGgtccgcatga ... atccaggcagGCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGACAA
EST: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGTCCAGGCAG
genomic: CCAAACCAGCCCTCAAGCTGGAGCAGTTCCTCGCCCTCGCCGTCGT-C---CAGgtccgcatga ... atccagg
caccactgcactgatcgctttgtgtgtgtgtgtgtgtttcttttcatccaggcagGCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGACAAAGATCAGTCTTCTTAAATTTGCTCACTTCACAGTCGTAGTTTCACACCA
cactgat putative branch site (score: 3)
tgtttcttttcatcc putative PPT
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaagacctttttatcaacagtttggttgcccttatactgtcttcaccactgcactgatcgctttgtgtgtgtgtgtgtgtttcttttcatccaggcagGCGATGCTCTGATTCATCTTTATAATCATTTCATCTCTGATTTTGAGACAAAGATCAGTCTTCTTAAATTTGCTCACTTCACAGTCGTAGTTTCACACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - atcaaca
- - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - -caccact
- - - - - - - - - - - - - - - - - - - - - - - - - - gcactga