Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacgattttgaattcttgctgcagatgcctgaattgttgaagtattctgttccctattattttgattgtagaataaaaaatgaccgtatcagtatatgatatgttcgtatcttgatttgcaatctgcagATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAG

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 3'ss of exon 3
gtaagttacgattttgaattcttgctgcagatgcctgaattgttgaagt-attctgttccctattattttgattgtagaataaaaaatgaccgtatcagtatatgatatgttcgtatcttgatttgcaatctgcagATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAG
||||||||    ||  |||  |   |   | ||| | ||| |   || |  |||  ||    ||    || ||||   |  | |||| ||    |  |  ||||    |||  ||   |  |||  | |||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||   ||||||||  ||||| || |||||||||||||||||||||  ||
gtaagttaattcttataatattgtataatgttgcataaatagcgaaatttgttcactttttcatacacttcattggccacaagaaaaaga--aaacgaacatat--cctgtctgt---tcaattctctatctgcagATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244484|gb|DT652398.1|DT652398
EST:     GAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGG                         ATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAA
genomic: GAAATTGACGTAAAAAATCACAAATGGGGGCACTATTTCATGTGTGGgtaagttacg ... caatctgcagATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAA
EST: gi|108824283|gb|EC278291.1|EC278291
EST:     TGGGGGCACTATTTCATGTGTGG                         ATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAA
genomic: TGGGGGCACTATTTCATGTGTGGgtaagttacg ... caatctgcagATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaatgaccgtatcagtatatgatatgttcgtatcttgatttgcaatctgcagATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAG
                                   tcttgat  putative branch site (score: 4)
                  tatatgatat  TA-rich tract