1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gacctgaaatactttgtttctgcatctagcttaatacagcatgcagctctttggaatagctagcaacacggccactgataccatatcccgcttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACTATAGCGCCGGGAGCCCCAGGCTGAAACAATGCTTGTCTGATATCAGCAT
species | Zea mays |
transcript | GRMZM2G458548_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTTACAGAGCTGGTCTCATGTCGCCTTTTTCTTCGCAGCAACCTTCGG GTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACT
genomic: TGGTTACAGAGCTGGTCTCATGTCGCCTTTTTCTTCGCAGCAACCTTCGGgtattttgtt ... cttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACT
gctctttggaatagctagcaacacggccactgataccatatcccgcttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACTATAGCGCCGGGAGCCCCAGGCTGAAACAATGCTTGTCTGATATCAGCAT
cactgat putative branch site (score: 33)
tatcccgcttccttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacctgaaatactttgtttctgcatctagcttaatacagcatgcagctctttggaatagctagcaacacggccactgataccatatcccgcttccttcagGTGAATCTGCAAATGTAGGATGGTCAGCTGATCCTTCTGTCCACACCAACTATAGCGCCGGGAGCCCCAGGCTGAAACAATGCTTGTCTGATATCAGCAT
-acctgaa
- - - - - - - - - -ctgcatc
- - - - - - - - - - - - - - - - - - -agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccactg