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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaatttaaaacatctcttttgttgatgaacatttgttagcctgtactgtctgagagaagaagaagaaggaaaaaaaaaaaccgagctgtgacaatgagtgcgtgcgtgcgttcttgctcctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACAGCCCTTCGCTCGAGCTAGAGAACATTGAGAAG

Basic information

species Zea mays
transcript GRMZM2G454928_T05
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60401348|gb|DN234155.1|DN234155
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATTAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78022296|gb|DV490683.1|DV490683
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78122856|gb|DV541240.1|DV541240
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|110521286|gb|EE025470.1|EE025470
EST:     AATATACACCGAAGACTGCTTGTTGGAGGACCGGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|148974669|gb|EE025471.2|EE025471
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|71320936|gb|DR797185.1|DR797185
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78109734|gb|DV528150.1|DV528150
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: gi|78122857|gb|DV541241.1|DV541241
EST:     AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG                         GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGG
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... cctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaccgagctgtgacaatgagtgcgtgcgtgcgttcttgctcctcgcacagGACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACAGCCCTTCGCTCGAGCTAGAGAACATTGAGAAG
                                   cgttcttgctcctc  CT-rich tract