Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgaacctttttttaatatattcactagttatggatatctaaaatcagcttcctgcccaatctagtcggatcttacatgacttgtttcacttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA

Basic information

species Zea mays
transcript GRMZM2G452633_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010437|gb|DT937607.1|DT937607
EST:     AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAAT                         AAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
genomic: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAATgtaagcagtt ... cttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
EST: gi|71329761|gb|DR801593.1|DR801593
EST:     AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAAT                         AAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC
genomic: AGGCACCCATTGTCCAGGAGTCCCATGGTGACTCTGGTGTCGGCAGTAATgtaagcagtt ... cttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagcttcctgcccaatctagtcggatcttacatgacttgtttcacttttatcagAAAGCTGGCAAGAATGAGTCTCACTCATCCCCAATTGATGCAGCATTGCCCGATGAGTCCAA
                         atcttac  putative branch site (score: 3)
                                    cttgtttcactttt  putative PPT
                                            acttttat  TA-rich tract