Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttgatgctttggcatgttagtctgtaaaagaatcttcactgcggctactaatattgtcaaaccttacgcagGTGGAGAGAGCACTGAAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG

Basic information

species Zea mays
transcript GRMZM2G452572_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452572_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 3'ss of exon 13
gttagcttgatgctttg--gcatgtt--agtctgtaaaagaatcttcactgcggctactaatattgtcaaaccttacgcagGTGGAGAGAGCACTGAAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG
|||| ||| ||| | ||  |||||||  | | |||| |||  || ||| | |  |||||||| |||  || ||||| |||||||  || ||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||||||||||| |||||| ||||||||||
gttaccttcatgatgtgtagcatgtttaactttgtagaagc-tcgtcatttcaactactaattttg--aatccttatgcagGTGCTGAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCGAAAATTTAATTGCTTG

upper sequence: GRMZM2G452572_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 3'ss of exon 13
----------------------gttagcttgatgctttggcatgttagtctgtaaaagaatcttcactgcggc-tactaatattgtcaaacct-tacgcagGTGGAGAGAGCACTGAAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG
                        ||| |   |   ||   |    | | |||| ||||  |   |    | | |  ||    |  ||   || |    |||   ||| ||  ||| |   ||  | ||||||||  | | |||| | |  ||||||||||||||||| |||||||| ||| |||||||     | |||||
cgaatttcaattccactttgtgagtagatcattcaatttttagagcaat-tgtagaagacccagaaaactgacatgttagggattccatttctgtgaaaagGAACAGATAGTTCTGGAGCTGACACAAATGGAAACGCTTTTGATTTCATGACAAAGTTGCTCCATTTAGCCTGGCATCCAACTGAAAACTCCCTAGCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtctgtaaaagaatcttcactgcggctactaatattgtcaaaccttacgcagGTGGAGAGAGCACTGAAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG
                             tactaatatt  TA-rich tract