Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaaagtaaaaaagttcaaataacattcaattttagaagtaaattgtgcgtgaactccagcagttgagcctataatattttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G451856_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 3'ss of exon 6
gtaagtaaagtaaaaaagttcaaataacattcaattttagaagtaaattgtgcgtgaactccagcagttgagccta--taatattttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTT
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gtgagttgcgaaaataatatc------cattttttacaataattaaattttaactgtaatgtga-aataaggcctgcttctttttttgcagGCAACTGCGACAAATAAAGTGCAAATTGATTTGATAGAGATGCTTCATATCCCTAGATGTGTCAAGTTTGTCAGCACAATTAACAGGCCCAACCTTTTCT
upper sequence: GRMZM2G451856_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtaaagtaaaaaagttcaaataacattcaattttagaagtaaat-tgtgcgtgaactccagc----agttgag----cctataat------attttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTT
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gtatgtcatgttatatttttctctttttcttctttttcactctttgtcatgctctacaactttgatgactagttaaagattcttacattttatgcatttcccagGCCACAGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60348558|gb|DN215531.1|DN215531EST: TTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACT GCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATC
genomic: TTGGCATTTTGAAAATTCAATTTCCCAGTGTTCCAATGATAGCTTTAACTgtaagtaaag ... tattttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttagaagtaaattgtgcgtgaactccagcagttgagcctataatattttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTT
tataatattttgca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaaagtaaaaaagttcaaataacattcaattttagaagtaaattgtgcgtgaactccagcagttgagcctataatattttgcagGCAACTGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG