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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatgaagtgataaatttaatatcatgtgtcctgtttcatgttgtgcaccatggagtgactactgactaagggtttgattacagCACAGCGCAGATCAATTCGAGAGGTTACTAAAGGAAATGTGTGCCGATGAAGATGGTGACCTTCTAATTGAATCTGCTGTAAAAGGCATTCCAAAGGTTT

Basic information

species Zea mays
transcript GRMZM2G451672_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 3'ss of exon 9
gtactaatgaagtgataaatttaatatcatgtgtcctgtttcatgttgtgcaccatggagtgactactgactaagggtttgattacagCACAGCGCAGATCAATTCGAGAGGTTACTAAAGGAAATGTGTGCCGATGAAGATGGTGACCTTCTAATTGAATCTGCTGTAAAAGGCATTCCAAAGGTTT
     ||| |  | ||||  ||  |||    |||  | ||||||||    ||  ||| |||   || |||| || |  || |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || || || |||||||||||||||||||| |||||||
--gtaaataacataataa-cttgttattg-atgtggtctttcatgtgacaca--atgtagt---tagtgaccaaagtcttaattacagCACAGTGCAGATCAATTTGAGAGGTTACTAAAGGAAATGTGTGCTGATGAAGATGGTGACCTCCTTATAGAGTCTGCTGTAAAAGGCATTCCGAAGGTTT

upper sequence: GRMZM2G451672_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------------------------------------------------gtactaatgaagtgataaatttaatatcatgtgtcctgtttcatgttgtgcaccatggagtgactactgactaagggtttgattacagCACAGCGCAGATCAATTCGAGAGGTTACTAAAGGAAATGTGTGCCGATGAAGATGGTGACCTTCTAATTGAATCTGCTGTAAAAGGCATTCCAAAGGTTT
                                                                             |  |          | |        ||  |    |||  | || ||  | |    | ||| ||| |  |     |   || |||||||| |||||||| || ||||||||  |||||||||||||||| ||||| || || |||||  |||| || || || || |||  ||||||||||||||
gtatgaaatattctttttctctttatattccttcagagatttcttcatcccaatcaaatacacccaacttcccccctttttctttcagaggagtggggggagtgaatgaaatttgttattatggcctaaaatgagac-act-atcatattctgccttgcagCACAGTGCAGATCAGTTTGAGAGGTTGTTAAAGGAAATGTGTGCAGATGAGGAAGGAGACCTGTTAATAGAGTCAGCAGTGAAAAACATTCCAAAGGTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtttcatgttgtgcaccatggagtgactactgactaagggtttgattacagCACAGCGCAGATCAATTCGAGAGGTTACTAAAGGAAATGTGTGCCGATGAAGATGGTGACCTTCTAATTGAATCTGCTGTAAAAGGCATTCCAAAGGTTT
                                            tttgatta  TA-rich tract