1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcatgtactcttatttgtgccctcaccatttgtcttatactgtaggattattgcttccccaaggtttctttttctaacctatcttggtgcttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAGCTTTCCACACTGGATACGGGAACTGGACTCCCCAAGAGAAGCTTCTCT
species | Zea mays |
transcript | GRMZM2G451483_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|71440867|gb|DR821917.1|DR821917
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|76928693|gb|DV171737.1|DV171737
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|148964920|gb|EC906058.2|EC906058
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|148995311|gb|EE034536.2|EE034536
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|71426212|gb|DR807262.1|DR807262
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|149085073|gb|EE174581.2|EE174581
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|148933030|gb|EE285926.2|EE285926
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|71439745|gb|DR820795.1|DR820795
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAEST: gi|149081983|gb|EE171148.2|EE171148
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
EST: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAG GTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
genomic: GCTGGTGGTTTCTTCTCCTTTCAGGGCACCTAGAAGCGACAATGCTGCAGgtatggattg ... cttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTA
ggattattgcttccccaaggtttctttttctaacctatcttggtgcttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAGCTTTCCACACTGGATACGGGAACTGGACTCCCCAAGAGAAGCTTCTCT
ttctaac putative branch site (score: 78)
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcatgtactcttatttgtgccctcaccatttgtcttatactgtaggattattgcttccccaaggtttctttttctaacctatcttggtgcttcatgcagGTGGCATGCTTAGAAATTTGCAGGTGAGGTACCGCTCAAGCTACACTGGTAGCTTTCCACACTGGATACGGGAACTGGACTCCCCAAGAGAAGCTTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- catgtac
- - - - - - - - - tgccctc
- - - - - - - - - - - - - ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcttcc