1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcatatgaatgtgcattgctttcgcacatgcaaaatgtggctataatgaacacacttactaggacatgctgttcagcacaaccaataacttgtgatttgtggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACAAGAGGGAGAAG
species | Zea mays |
transcript | GRMZM2G448715_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAA-CAAGGGGAAGCGGAATTAAAEST: gi|24462488|gb|BM660019.1|BM660019
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGG-AAGCGGAATTAAA
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGA-CTTGCCAGCAAGGGAAGCGGAATTAAAEST: gi|91048315|gb|EB158733.1|EB158733
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCT-GCAAGCAAGGGAAGCGGAATTAAA
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|33770808|gb|CF273102.1|CF273102
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|211223444|gb|FL382580.1|FL382580
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAS-AAGGGAAGCGGAATTAAACEST: gi|28188216|gb|CB179826.1|CB179826
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAGGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|76931490|gb|DV172743.1|DV172743
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|211023197|gb|FK976151.1|FK976151
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAS-AAGGGAAGCGGAATTAAACEST: gi|211046010|gb|FL422511.1|FL422511
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|211023203|gb|FK976157.1|FK976157
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|37621984|gb|CF675037.1|CF675037
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|211025647|gb|FK976165.1|FK976165
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|89251197|gb|DY622983.1|DY622983
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACEST: gi|37621886|gb|CF674939.1|CF674939
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
EST: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAG GACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
genomic: AACCGGCAGACTTCAGTGCTACAGTGGATATACCCCTTGACTCGTCAAAGgtgcatatga ... ggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAAC
ttactaggacatgctgttcagcacaaccaataacttgtgatttgtggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACAAGAGGGAGAAG
caataac putative branch site (score: 2)
aataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatatgaatgtgcattgctttcgcacatgcaaaatgtggctataatgaacacacttactaggacatgctgttcagcacaaccaataacttgtgatttgtggatatccagGACCTGAAGAAAAGAGAGAAGGAGCTGCAAGCAAGGGAAGCGGAATTAAACAAGAGGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA