Sequence
atgc intronic sequence ATGC exonic sequence...ttttttcccttaatctcctcacatgttatcttcagtccatacatgactcaaccttttatttgctgactacaaagttctttcttctgttcttctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGTACCAAAGTGGCAACATTACACAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G447433_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g27040.1 (Oryza sativa), 3'ss of exon 2
ttttttcccttaatctcctcacatgttatcttcagtccatacatgactcaacc-------ttttatttgctgactacaaagttctttcttctgttcttctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGTACCAAAGTGGCAACATTACACAT--------------------------
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---tttctgtttgcacactcatatg--atcactagttcatattgaccacgttcatgttagttatatttgcc--ctgctgattccaagcttcctttttgattttacagGGAAAAATGCCTGATATCCAGTTAGGGTGCCACACTATAAGGTCCCATGGAACCAGTGTGGCAAGACTCCACATGTATGACTGGATAATACTTCTCTTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211481710|gb|FL151171.1|FL151171EST: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCA--GT-G-AGT---T-G GGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
genomic: ATCTGAACCAGCGCAGTTTATCAGGGACGTAGCACTGTAGCAGTGAGTTGgtgagctctc ... tctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actcaaccttttatttgctgactacaaagttctttcttctgttcttctgttctagGGGAGGATGCCTGATATCCAGCTGGGATGCCACACTATAAGGTCCCATGGTACCAAAGTGGCAACATTACACAT
tgctgac putative branch site (score: 2)
ttctttcttctgttct putative PPT
ttttattt TA-rich tract