1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttccagtacttcgtgagactgtaattggaatcatattttccaacgcaaattgagaaatattgacttaactaatatgactttaatgttttcattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCGATGGATCCATCAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTG
species | Zea mays |
transcript | GRMZM2G446108_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAG GTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCGEST: gi|22491283|gb|BU051206.1|BU051206
genomic: ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtttgc ... cattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG
EST: ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAG GTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG
genomic: ATGAAATACAGTTCATATTGGATGCAATCTCTGACTATCTTAATGTTCAGgtgtgtttgc ... cattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCG
gcaaattgagaaatattgacttaactaatatgactttaatgttttcattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCGATGGATCCATCAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTG
ttttcattc CT-rich tract
aaatattgacttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccagtacttcgtgagactgtaattggaatcatattttccaacgcaaattgagaaatattgacttaactaatatgactttaatgttttcattcattagGTAAGGCGTTCAGATGTTCTTTCTGCCTGGAGTGGTATACGTCCTTTGGCGATGGATCCATCAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - aacgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gagaaata