1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cctcgcgccgattccatcccgcgaggctagctgctccgtcgacccgtctgtcgtttactcacgccgccggctcttgactctgccgccttgcctcggccagCATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCCGGCGCAGTTCGCGGCGGCGCCCCTCAGGATGGGGTACGGGAGGCCGGCG
species | Zea mays |
transcript | GRMZM2G445575_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGCTCTACTCCGGATACCTTGACGACCATTTCAACCCCCACAAGCTAAG CATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCCEST: gi|211181979|gb|FL255379.1|FL255379
genomic: GAGCTCTACTCCGGATACCTTGACGACCATTTCAACCCCCACAAGCTAAGgtgagtgctt ... cctcggccagCATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCC
EST: GAGCTCTACTCCGGATACCTTGACGACCATTTCAACCCCCACAAGCTAAG CATCGCCGGCAGCGCCGTCTCGCCGCCGEST: gi|7145574|gb|AW507055.1|AW507055
genomic: GAGCTCTACTCCGGATACCTTGACGACCATTTCAACCCCCACAAGCTAAGgtgagtgctt ... cctcggccagCATCGCCGGCAGCGCCGTCTCGCCGCCG
EST: GAGCTCTACTCCGGATACCTTGACGACCATTTCAACCCCCACAAGCTAAG CATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCC
genomic: GAGCTCTACTCCGGATACCTTGACGACCATTTCAACCCCCACAAGCTAAGgtgagtgctt ... cctcggccagCATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCC
gtctgtcgtttactcacgccgccggctcttgactctgccgccttgcctcggccagCATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCCGGCGCAGTTCGCGGCGGCGCCCCTCAGGATGGGGTACGGGAGGCCGGCG
ccttgcctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcgcgccgattccatcccgcgaggctagctgctccgtcgacccgtctgtcgtttactcacgccgccggctcttgactctgccgccttgcctcggccagCATCGCCGGCAGCGCCGTCTCGCCGCCGGAGTACATGGCGTCGGCGTCGCCGGCGCAGTTCGCGGCGGCGCCCCTCAGGATGGGGTACGGGAGGCCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG