1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattcttatccttccactgtactttttgatagaaattcttaatgcttctcaggctggtataaatctaatggttgcacccttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCCATATTTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTG
species | Zea mays |
transcript | GRMZM2G444643_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAA ATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCEST: gi|78104263|gb|DV522681.1|DV522681
genomic: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAAgtaattctta ... ttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTC
EST: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAA ATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCEST: gi|78086491|gb|DV514884.1|DV514884
genomic: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAAgtaattctta ... ttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTC
EST: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAA ATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTC
genomic: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAAgtaattctta ... ttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTC
attcttaatgcttctcaggctggtataaatctaatggttgcacccttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCCATATTTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTG
cccttac putative branch site (score: 89)
cccttactctc CT-rich tract
tataaatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttatccttccactgtactttttgatagaaattcttaatgcttctcaggctggtataaatctaatggttgcacccttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCCATATTTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG