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gtgaattgttgctgaacttgttgtccacttgcattttttactgttaagaaatacttcatttctataagtatttacatcaatcctgaatgcttactattgttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGACCTCGCCAAAAG
species | Zea mays |
transcript | GRMZM2G443985_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|148982505|gb|EE028350.2|EE028350
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|76019410|gb|DT946580.1|DT946580
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|148949820|gb|EC895309.2|EC895309
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|74240350|gb|DT648264.1|DT648264
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|149014989|gb|EE044730.2|EE044730
genomic: GCAGTACTTTGTAAA-CCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|148962197|gb|EE013012.2|EE013012
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|148958430|gb|EC904664.2|EC904664
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|211132967|gb|FL170872.1|FL170872
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGGAACCACTTCCGTCGTGCTGGAEST: gi|211132970|gb|FL170875.1|FL170875
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGEST: gi|148936583|gb|EC880704.2|EC880704
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGG
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|211132977|gb|FL170882.1|FL170882
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGGAACCACTTCCGTCGTGCTGGAEST: gi|149071167|gb|EE159563.2|EE159563
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|76016086|gb|DT943256.1|DT943256
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGAEST: gi|89762366|gb|DY689982.1|DY689982
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGCCCAGAGGTAAACATTTCCGTCGTGCTGGAEST: gi|211132972|gb|FL170877.1|FL170877
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAG ATTGTTGTTCACAAGGATGGGGCCAGAGGGAACCAEST: gi|211132971|gb|FL170876.1|FL170876
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCA
EST: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAA AATGTTGTTCACAAGGATGGGCCCAGAAGG-AACCACTTCCGTCGTGCTGG
genomic: GCAGTACTTTGTAAACCCAGATGACACCGTCTGCCAGAAGgtgaattgtt ... ttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGA-GGTAACCATTTCCGTCGTGCTGG
ttcatttctataagtatttacatcaatcctgaatgcttactattgttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGACCTCGCCAAAAG
tgcttac putative branch site (score: 2)
ttctataagtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattgttgctgaacttgttgtccacttgcattttttactgttaagaaatacttcatttctataagtatttacatcaatcctgaatgcttactattgttcaatgtagATTGTTGTTCACAAGGATGGGCCCAGAGGTAACCATTTCCGTCGTGCTGGACCTCGCCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA