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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacgacatgcacaaagaccaagcaagactagctgcatatgctagcttttttccattcgatttccatgcatggtggtgagtggtgacaagctaattgcaccatctcctctgcatgcaatgcagCTCGGCGGTCCTACGTGGGACGTGGAGCTCGGCCGGCGGGACGGGACGACGGCGAACCTGGACGACGCGAACAACGACCTCCCAGCGCCGACCCTGGACC

Basic information

species Zea mays
transcript GRMZM2G443885_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443885_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g55740.1 (Oryza sativa), 3'ss of exon 2
gtaagcacgacatgcacaaagaccaagcaagactagctgcatatgctagcttttttccattcgatttccatgcatggtggtg-agtggtgacaagctaattgcaccatctcctctgcatgcaatgcagCTCGGCGGTCCTACGTGGGACGTGGAGCTCGGCCGGCGGGACGGGACGACGGCGAACCTGGACGACGCGAACAACGACCTCCCAGCGCCGACCCTGGACC
                                            |  |||      ||   ||||  |||  |       || | |  |||  |  | || |        |    | |     ||||||| ||||| || ||||||||||| ||||| |||||||| |||||||||||||||| ||||||||  |||||||||||||||||  |||||||    ||||
--------------------------------------------gtaagcaccagaccggccgatcaccactccgatccctgtatttttgatgaattgatcgggaa----cgaacgaactgtgtgcagCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggtggtgagtggtgacaagctaattgcaccatctcctctgcatgcaatgcagCTCGGCGGTCCTACGTGGGACGTGGAGCTCGGCCGGCGGGACGGGACGACGGCGAACCTGGACGACGCGAACAACGACCTCCCAGCGCCGACCCTGGACC
                    agctaat  putative branch site (score: 3)
                       taatt  TA-rich tract