Sequence
atgc intronic sequence ATGC exonic sequence...ctacttaacactcgtttcattcctctatcattttgctgcttatgttaaatatatatacgacttctatccattcttataaaaaagggaattatatgttcagGTTGAAATCATGAATGAGTTGCCTGAGGACAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G439885_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g19850.1 (Oryza sativa), 3'ss of exon 5
ctacttaacactcgtttcattcctctatcattttgctgcttatgttaaatatatatacgac-ttctatccattcttataaaaaagggaattatatgttcagGTTGAAATCATGAATGAGTTGCCTGAGGACAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT
|| | | || || | | | | | || || || | | | || || || ||| | | || || ||||| | | | ||||||||||||| |||||||||||||| ||||||| |||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||
ataagcataagcgaattaatgaggccctaaatat-ctatttctgcttatatcacatttgagattttattaaattttttatttgtttgaattgtgtttctagGTTGAAATCATTAATGAGTTGCCTGAAGACAAGACCATTACAGTATACAGATGTGGTCCTCTAGTTGACCTTTGCCGTGGGCCACACATCCCCAATACTT
upper sequence: GRMZM2G439885_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 5
----------------ctacttaacactcgtttcattc--ctctatcatt--ttgctgcttatgttaaatatatatacgacttctatccattcttataaaaaagggaattatatgttcagGTTGAAATCATGAATGAGTTGCCTGAGGACAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT
| || || | |||| | | ||| || || | | || || | || | ||| | | | | |||| |||||||||| ||||| || ||||| ||||| | || || |||||||| ||||| || || ||||| || ||||||||||| || || |||||||| |
gtaagtgaagctccatttttatatcatccacaccatttgaccccatccttagccacttccttattttcttactattctgatcctcactcatatgggttgtttatcatctcccttaatcagATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatatatatacgacttctatccattcttataaaaaagggaattatatgttcagGTTGAAATCATGAATGAGTTGCCTGAGGACAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT
ttataaaaaagggaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctacttaacactcgtttcattcctctatcattttgctgcttatgttaaatatatatacgacttctatccattcttataaaaaagggaattatatgttcagGTTGAAATCATGAATGAGTTGCCTGAGGACAAGAGCATTACTGTATACAGGTGTGGTCCTTTAGTTGACCTATGCCGTGGGCCACACATCCCAAATACTT
- - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa