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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacaattaaacctatagcttttgtaactcaacatatcaaggctgtttgtgaactgaatgccttttttggggggatattctgcagATCTTTGTTAATTGCATTTCAGTCATTTTGCAAATGTGTTGGTGATGTAGAAATGGGAAAG

Basic information

species Zea mays
transcript GRMZM2G439866_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439866_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 3'ss of exon 18
gtgacaattaaacctatagcttttgtaactcaacatatcaaggctgtttgtgaactga--atgccttttttggggggatattctgcagATCTTTGTTAATTGCATTTCAGTCATTTTGCAAATGTGTTGGTGATGTAGAAATGGGAAAG
||||  ||   || | |   ||| | | |||   ||||  ||||||  | |||| |||  ||   ||||||      ||  |||||||||| || |||||||| ||||||||||||||  | |||||||||||| | || |||||||||
gtgaatatgggacttttt-ttttggaatctcttaatatgtaggctgcatatgaattgatgatatattttttt-----atgatctgcagATCATTATTAATTGCGTTTCAGTCATTTTGTGACTGTGTTGGTGATATTGAGATGGGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatatcaaggctgtttgtgaactgaatgccttttttggggggatattctgcagATCTTTGTTAATTGCATTTCAGTCATTTTGCAAATGTGTTGGTGATGTAGAAATGGGAAAG
                                tttttt  TA-rich tract