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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT

Basic information

species Zea mays
transcript GRMZM2G439201_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g46750.1 (Oryza sativa), 3'ss of exon 4
gtatgcataattttcat-ttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
||| | |||| ||     |||  | ||||| ||||||| ||     | ||| | |||    |||| |            || | |||| |||||      |||   |||| |     |     |   || ||   |||  |   ||  ||        || |  |||| ||| || ||||| || |||||  |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
gtaagaataagttcagcattaaaattgttaccctacatagtgaacaagaattacttg----ttatat------------ggccatgtt-gtgttc-----aattgtttttacccattg----ctagtttatatatcttt-tgtctaacaa--------caaagctttatagGCGGAAAATCATCTGTCCTGTTGGATGTCAAACCATGGGACGACGAGACTGATATGAAGAAGTTGGAGGAGGCTGTCCGCAGTGTGCAGATGGAGGGTCT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G04050.1 (Glycine max), 3'ss of exon 4
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                                   |||| | || ||||  |||  |   | | |||  || ||  ||||| |     ||| || ||  |   | |      |||  ||    ||   |  | |||| ||        ||  |||||| ||||| || || ||  | || || || || ||||| ||||| || || |||||||||||||| |||||||| ||||||||  |||||   |||||
---------------------------------------------------atttag-ttatatggtgaaattacattgttct-atttgttcttctttt-----cttgtttttcaattgagtgagtgcttaaaac----tatcaaacattggcctt--------ttttagGTGGCAAATCTTCTGTTCTGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 4
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                                || | |||    | || ||   | | |  ||| ||  ||  |      ||  |||   ||||||||| ||||     | |||   |||     || | |||| |      | || |||| |||||| || || || |||||| | ||||| || || ||||| |||||||| || |||||||||||||| ||| ||||||||||| |  |||||   ||| |
------------------------------------------------atgacttg----tcatatact-catatggaggactaatttcttaacgcta-gatcttattttcttgctgaaa----gcatttgacact-----gtcactaattg------acat-tttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G04350.1 (Glycine max), 3'ss of exon 4
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                            |   ||  | |  ||||     |    || |||   |||| |   |   ||||||        |||||||| ||||           |   |||| |  | | | |   ||  |||   |||| |||||| || || || |||||| | ||||| || || |||||||||||||| || |||||||||||||| ||||||||||| ||| |  |||||   ||| |
--------------------------------------------ttctattttcttaatttctcacatggactattt---tcttatcgctagatcttat--------tttcttgctgaaa-----------gcgtttgaca-ctgtgacttaattgacat---tttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0009g02410.t01 (Vitis vinifera), 3'ss of exon 4
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                           | |||||    | | |   |  ||   | ||||| | | || | | |  ||  |  |        |||||  || |  |||||  ||         || ||  ||||     || || ||||   |||||| ||||| || || ||| ||||||| ||||| ||||| |||||||| || |||||||||||||| |||||||| |||||| |  |||||   || ||
-------------------------------------------tgataatgtccttggta--aattatggcatgtttggttgttttcaatagtttctgga--------ttcttatagca-tttgaccattt--------tattttctaat-----tgtatctatt---agGTGGAAAATCGTCTGTTCTTTTGGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTATTGAGATGCCAGGCCT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S145_172V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttatt------aatggctttgcata--tatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                                                     |       | ||| ||  ||| ||   | | ||||  ||||| ||  |  | |||  |||   ||  || |   | |       | | |  |||| |   |     ||| ||| || || ||  |  | ||||| ||||| |||||||||||||||||||| |||  |||| ||||||||  ||| ||   |||||| |||||||||||
------------------------------------------------------------------gtgagtcagaaaagtcatgaaagtattcagtgtcatcaaattttcctgttggcatttg--tttggagagctgttgtgtgtctctctaactcgtattgcctgattgcacgcagTTGGAAAGTCGTCTATTGTCATGGACGTCAAGCCATGGGACGATGAGACTGACATGGTGAAGTTGGAGGAGTGTGTTCGATCTGTCCAAATGGAGGGTCT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ07795 (Selaginella moellendorffii), 3'ss of exon 4
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                                                                                                 | | |  | |  ||| |      || |  ||     |  || | |   | | || || ||| ||||| ||||| |||||||| || ||||||||||||||||| || || |||  |||||| |||| ||||||  |    || || |||   || ||
-----------------------------------------------------------------------------------------------------------------gta-agccatagcttctcttctatggttcttcgagctcactct-ctcttttgtatagCTGGGAAATCGTCCGTGCTTATGGACGTGAAACCATGGGACGATGAAACCGACATGGTGAAGCTCGAGGCGGCTGTGAGGGCCGTGCAAATGCCCGGGCT

upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ28248 (Selaginella moellendorffii), 3'ss of exon 4
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                                                                                                                 ||   | |||  ||| ||    ||| |  ||     |  || | |   | | || || ||| ||||| ||||| |||||||| || ||||||||||||||||| || || |||  |||||| |||| ||||||  |    || || |||   || ||
-------------------------------------------------------------------------------------------------------------gtaagccatagcttctcttcta---tttggttcttcgagctcactct-ctcttttgtatagCTGGGAAATCGTCCGTGCTTATGGACGTGAAACCATGGGACGATGAAACCGACATGGTGAAGCTCGAGGCGGCTGTGAGGGCCGTGCAAATGCCCGGGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78026008|gb|DV494395.1|DV494395
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|28986859|gb|CB351345.1|CB351345
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211348241|gb|FL038040.1|FL038040
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18163320|gb|BM333159.1|BM333159
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15353007|gb|BI502618.1|BI502618
EST:     GATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: GATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|83278891|gb|DV942899.1|DV942899
EST:     AGCTGATGAGCGTGCTGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTAAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|8577147|gb|BE129784.1|BE129784
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15427044|gb|BI542866.1|BI542866
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18163339|gb|BM333178.1|BM333178
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|78082369|gb|DV510781.1|DV510781
EST:     AGCTGATGAGCGTGCCGCCGCTCCCAAGGCCTCTTTTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|22819207|gb|BU499297.1|BU499297
EST:     AAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|17929728|gb|BM266694.1|BM266694
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAGCCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18164640|gb|BM334479.1|BM334479
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18162366|gb|BM332205.1|BM332205
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|6827521|gb|AW331164.1|AW331164
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18165227|gb|BM335066.1|BM335066
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|5058925|gb|AI737401.1|AI737401
EST:     GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|4646632|gb|AI491461.2|AI491461
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|17929945|gb|BM266905.1|BM266905
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|6918862|gb|AW400392.1|AW400392
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15214894|gb|BI431088.1|BI431088
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|1472933|gb|AA011880.1|AA011880
EST:     AGCTGATGA-CGTGCCGCCGCTNNCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|17929848|gb|BM266808.1|BM266808
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|60342883|gb|DN209856.1|DN209856
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|32916009|gb|CF020821.1|CF020821
EST:     AAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCAT-GGACGATGAGACTG
genomic: AAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18172938|gb|BM348326.1|BM348326
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18173107|gb|BM348495.1|BM348495
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|60351835|gb|DN218808.1|DN218808
EST:     AGCTGATGAGCGTGCTGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTAAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|17930624|gb|BM267584.1|BM267584
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18169107|gb|BM338947.1|BM338947
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|17932169|gb|BM269129.1|BM269129
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18172091|gb|BM347479.1|BM347479
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18175209|gb|BM350597.1|BM350597
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211012474|gb|FL435060.1|FL435060
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|7844581|gb|AW787803.1|AW787803
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCTTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|60357565|gb|DN224538.1|DN224538
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211477958|gb|FL457110.1|FL457110
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|33102823|gb|CF062783.1|CF062783
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|78024595|gb|DV492982.1|DV492982
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCTTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15353041|gb|BI502652.1|BI502652
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|31364219|gb|CD448574.1|CD448574
EST:     AGCTGATGAGCGTGCTGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTAAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211433428|gb|FL362818.1|FL362818
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18163094|gb|BM332933.1|BM332933
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|78117318|gb|DV535705.1|DV535705
EST:     CTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: CTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|9462037|gb|BE454029.1|BE454029
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|44901389|gb|CK827934.1|CK827934
EST:     GCTGATGAGCGTGCCGCCGCTGCCCAAGGCTTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: GCTGATGAGCGTGCCGCCGCTG-CCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|8665980|gb|BE186796.1|BE186796
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211350636|gb|FL038049.1|FL038049
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTYTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|8665851|gb|BE186667.1|BE186667
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|30087313|gb|CB885521.1|CB885521
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18167021|gb|BM336860.1|BM336860
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18163962|gb|BM333801.1|BM333801
EST:     AGTTGATAAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15426968|gb|BI542790.1|BI542790
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|5740011|gb|AI947701.1|AI947701
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15589956|gb|BI674572.1|BI674572
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211216549|gb|FL471285.1|FL471285
EST:     AGCTGATGAGCGTGCTGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTAAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|6973677|gb|AW438251.1|AW438251
EST:     GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCT-AAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211113426|gb|FL350255.1|FL350255
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGANA                         GTGGTAAATCCTCCGTCCTTATGGATGTCA
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCA
EST: gi|9731036|gb|BE509788.1|BE509788
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18166242|gb|BM336081.1|BM336081
EST:     ATGAGCGTGCCGCCGCTGCCAAGGCCTCTTATAAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: ATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCT-AAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18166383|gb|BM336222.1|BM336222
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18169564|gb|BM339404.1|BM339404
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|15590373|gb|BI674989.1|BI674989
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|60355609|gb|DN222582.1|DN222582
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|166468131|gb|EG063853.1|EG063853
EST:     GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTACTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTT-CTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|6637144|gb|AW261416.1|AW261416
EST:     GCTGATGAGCGTGCTGCCGCTGCCAAGGCCTCTTNCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTAAAACCATGGGACGATGAGACTG
genomic: GCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTT-CTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|60339271|gb|DN206244.1|DN206244
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18175121|gb|BM350509.1|BM350509
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|50327856|gb|CO522982.1|CO522982
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAACCCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|33104035|gb|CF063995.1|CF063995
EST:     GGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCGAACCATGGGGCGATGAGACTG
genomic: GGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|17930839|gb|BM267799.1|BM267799
EST:     GCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAAACCATGGGACGATGAGACT
genomic: GCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTC-AAACCATGGGACGATGAGACT
EST: gi|22549268|gb|BU101469.1|BU101469
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|8103147|gb|AW927805.1|AW927805
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|6021988|gb|AW066916.1|AW066916
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18649423|gb|BM498242.1|BM498242
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211191967|gb|FL164730.1|FL164730
EST:     GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18166200|gb|BM336039.1|BM336039
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTATAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|37396765|gb|CF635676.1|CF635676
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18168111|gb|BM337951.1|BM337951
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|9566382|gb|BE475891.1|BE475891
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|211383057|gb|FL320865.1|FL320865
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18172592|gb|BM347980.1|BM347980
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|166522964|gb|EG130510.1|EG130510
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAAACCATGGGACGA
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAA-CCATGGGACGA
EST: gi|19822750|gb|BQ048774.1|BQ048774
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCTTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAANCCATGGGNCGATGAGNCTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|18648843|gb|BM497662.1|BM497662
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: gi|22489774|gb|BU049697.1|BU049697
EST:     AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA                         GTGGTATATTTTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
genomic: AGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 882

GATGATGACCTTGATCTTTTTGGTGATGAAACTGAGGAGGACAAGAAGGCAGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 895

GATGATGACCTTGATCTTTTTGGTGATGAAACTGAGGAGGACAAGAAGGCAGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1100

GATGATGACCTTGATCTTTTTGGTGATGAAACTGAGGAGGACAAGAAGGCAGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 353

GATGATGACCTTGATCTTTTTGGTGATGAAACTGAGGAGGACAAGAAGGCAGCTGATGAGCGTGCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT
                            tattaat  putative branch site (score: 353)
                    ttgatagttattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG