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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGACAATTGTCGACGATCTTGTGTCCATCGACACTCTAATTGAGGACCACCT

Basic information

species Zea mays
transcript GRMZM2G439201_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g46750.1 (Oryza sativa), 3'ss of exon 5
gtaagtcactttcaatgctacagattttcctgtatttaaccatttgacataaacttgtaatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGACAATTGTCGACGATCTTGTGTCCATCGACACTCTAATTGAGGACCACCT
                |  |     | |    |  ||| | |   ||  |    |||        | |    |    |   |   | ||     | |    ||  | | ||||||||||||||||||| || ||||| ||||||||| ||   ||||||||||| ||||| || ||  | |||||  | || |  || || || || || ||
----------------gtgaggagctatttccttcttagcta---gaagtgtctttgctgattgtccatttctaatcacacaactaacacacatcgtt--tttaaattgcagCAAAGCTTGTGCCTGTGGGTTACGGGATCAAGAAGTTGCAGATCATGTTGACCATTGTTGATGACTTGGTGTCTGTGGATAGCCTTATCGAAGAACATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166501|gb|BM336340.1|BM336340
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|14529297|gb|BI096430.1|BI096430
EST:     GGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191970|gb|FL164733.1|FL164733
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15353007|gb|BI502618.1|BI502618
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|22819207|gb|BU499297.1|BU499297
EST:     GGAGGAGGCTGTCCGCAGTGTCCCGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18170740|gb|BM340580.1|BM340580
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|32937091|gb|CF041910.1|CF041910
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCGTGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|5740011|gb|AI947701.1|AI947701
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATNCGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18177768|gb|BM378978.1|BM378978
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191968|gb|FL164731.1|FL164731
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGT-CCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|32916009|gb|CF020821.1|CF020821
EST:     GGAGGAGGCTGTCCCCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATCCGGCATCAAGAAGATGACTATCATGTTGC
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|6918862|gb|AW400392.1|AW400392
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191966|gb|FL164729.1|FL164729
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191967|gb|FL164730.1|FL164730
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|19822750|gb|BQ048774.1|BQ048774
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|76290060|gb|DV029628.1|DV029628
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211404135|gb|FL441006.1|FL441006
EST:     TGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTAGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: TGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18166242|gb|BM336081.1|BM336081
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15589956|gb|BI674572.1|BI674572
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|32936228|gb|CF041040.1|CF041040
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15426968|gb|BI542790.1|BI542790
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|17929848|gb|BM266808.1|BM266808
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|4610033|gb|AI600872.1|AI600872
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|78024595|gb|DV492982.1|DV492982
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|37396765|gb|CF635676.1|CF635676
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18166471|gb|BM336310.1|BM336310
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|78117318|gb|DV535705.1|DV535705
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|50325697|gb|CO520823.1|CO520823
EST:     GGAGGAGGGTGTCCGCAGTGGCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGGTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211191969|gb|FL164732.1|FL164732
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|6578066|gb|AW244203.1|AW244203
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|60357565|gb|DN224538.1|DN224538
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|18163368|gb|BM333207.1|BM333207
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|4646632|gb|AI491461.2|AI491461
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|211477958|gb|FL457110.1|FL457110
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|33104035|gb|CF063995.1|CF063995
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|17930839|gb|BM267799.1|BM267799
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|84976715|gb|DW475137.1|DW475137
EST:     GGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGTATCAAGAAGATGACTATCATGTTGA
genomic: GGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|8103258|gb|AW927908.1|AW927908
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|33098078|gb|CF058038.1|CF058038
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGCCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|15353041|gb|BI502652.1|BI502652
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|78082369|gb|DV510781.1|DV510781
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|22549268|gb|BU101469.1|BU101469
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
EST: gi|6637144|gb|AW261416.1|AW261416
EST:     GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCAT                         CAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA
genomic: GGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCTGACTTGGGGAGCATgtaagtcact ... tgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatacaacaacgcttgtgtatgtattaaccatttgacataaacttgtaatacagCAAAGCTTGTGCCTGTTGGATACGGCATCAAGAAGATGACTATCATGTTGACAATTGTCGACGATCTTGTGTCCATCGACACTCTAATTGAGGACCACCT
                                      ataaacttgtaata  TA-rich tract