1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagcagcagcagttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCAGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCA
species | Zea mays |
transcript | GRMZM2G437859_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|149001123|gb|EE038382.2|EE038382
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAAGCCATACAGGGGGCACTGATAGTGEST: gi|78084450|gb|DV512843.1|DV512843
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTG
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|71439895|gb|DR820945.1|DR820945
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|76923378|gb|DV169457.1|DV169457
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|74238882|gb|DT646796.1|DT646796
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|74240437|gb|DT648351.1|DT648351
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAA AGGTTCCTCGAGACCATGAAGGCCATACAGGEST: gi|91049745|gb|EB160163.1|EB160163
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGG
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|211102809|gb|FL069927.1|FL069927
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGGCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|71310987|gb|DR791795.1|DR791795
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|71438783|gb|DR819833.1|DR819833
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
aggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCAGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCA
aaagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagcagcagttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCAGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG