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gtgagcagcagcagttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCAGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCA
species | Zea mays |
transcript | GRMZM2G437859_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAAGCCATACAGGGGGCACTGATAGTGEST: gi|71439895|gb|DR820945.1|DR820945
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTG
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|74240437|gb|DT648351.1|DT648351
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAA AGGTTCCTCGAGACCATGAAGGCCATACAGGEST: gi|91049745|gb|EB160163.1|EB160163
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGG
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCEST: gi|211102809|gb|FL069927.1|FL069927
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
EST: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAG AGGTTCCTCGAGACCATGAAGGGCATACAGGGGGCACTGATAGTGTCCTCC
genomic: TGGCCATCATCCAGGACCCGTCGCTTTCTGGGATACCCGACGGTCATGAGgtgagcagca ... ggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCC
aggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCAGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCA
aaagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagcagcagttgcctgtgactgtccgttctgcctgttgcttctgatggaggcggtggcgtgtgtgtaatctgaaagtttttttccccatctgtggttgagcagAGGTTCCTCGAGACCATGAAGGCCATACAGGGGGCACTGATAGTGTCCTCCAGCATTCAGATCATTCTGGGCTACAGCCAGCTGTGGGGTATTTTCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG