1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccatgatttatcactaggtcattgtgtttgtggccaacgagtattgttctaacagttatgttcccatagctagctggattcattgttgtgttttgttcagGGTACTTTCACCACTTCTGGTATGGTTCTGTCTTTAATGTGCCAGGGATTATTATATTGTTTTTGGTTTGGATTTGGAATGGTTTGGGGTCCACAACGAT
species | Zea mays |
transcript | GRMZM2G434519_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gttctaacagttatgttcccatagctagctggattcattgttgtgttttgttcagGGTACTTTCACCACTTCTGGTATGGTTCTGTCTTTAATGTGCCAGGGATTATTATATTGTTTTTGGTTTGGATTTGGAATGGTTTGGGGTCCACAACGAT
ttctaac putative branch site (score: 1)
ttttgttc putative PPT
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgatttatcactaggtcattgtgtttgtggccaacgagtattgttctaacagttatgttcccatagctagctggattcattgttgtgttttgttcagGGTACTTTCACCACTTCTGGTATGGTTCTGTCTTTAATGTGCCAGGGATTATTATATTGTTTTTGGTTTGGATTTGGAATGGTTTGGGGTCCACAACGAT
-catgatt
- - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - -ccaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgt