1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagaatattatgtatgtcttgtggtgatgtctgtgttacttgtcaagcgtcataataataacaattatttgatttgggtatttgaatgcccctcaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGACTAGATATGAAAGTTACGGCATTG
species | Zea mays |
transcript | GRMZM2G432801_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACG GTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGAEST: gi|88755828|gb|DY539969.1|DY539969
genomic: CATCAGGAACACTCATCAAGTGGACAAAGGGCTTTTCCATCAATGGCACGgtaaaaattc ... cctcaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
EST: GGCTTTTCCATCAATGGCACG GTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
genomic: GGCTTTTCCATCAATGGCACGgtaaaaattc ... cctcaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGA
agcgtcataataataacaattatttgatttgggtatttgaatgcccctcaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGACTAGATATGAAAGTTACGGCATTG
tgcccctc CT-rich tract
ataataataacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaatattatgtatgtcttgtggtgatgtctgtgttacttgtcaagcgtcataataataacaattatttgatttgggtatttgaatgcccctcaatcagGTTGGTGAAGATGTTGTTTCTGAGTTGAGCAGGGCCATGGAGAGGCAGGGACTAGATATGAAAGTTACGGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - -atgtatg
- - - - - - - - - - - ggtgatg
- - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc