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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattatccactagatggcttttcacttttctctccttgcaacaatacttaattaatgattaggtatgttgcctgttggcgttactcatgaagcattttgtgcagGGAGGAACAAGCAAAAGCCAAGCGGCTGGCTCGTTTCCATGTTGAATTAAGCAGGCCAGTACAAAATACTAATGATTTTGTGAAAACAGTTAAAAGCTCT

Basic information

species Zea mays
transcript GRMZM2G429231_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G429231_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g45160.1 (Oryza sativa), 3'ss of exon 8
gtacttattatccactagatggcttttca--cttttctctccttgcaacaatacttaattaatgattaggtatgttgcctgttggcgtt-actcatgaagcattttgtgcagGGAGGAACAAGCAAAAGCCAAGCGGCTGGCTCGTTTCCATGTTGAATTAAGCAGGCCAGTACAAAATACTAATGATTTTGTGAAAACAGTTAAAAGCTCT
|| ||||| || ||    ||       ||  | |||| | ||| | |||| | |||      |||| |   ||| | |||| |||  || | || |||   ||||  || || ||  ||||||||||||| |||||  || ||||||||  ||||||||||||||| || ||  | |||| |||||||||||| ||| |    ||  |||||
gtgcttatgattcagcttataataacccatccctttcccacctcgaaacagtgctt------tgatcaaacatgctacctgctggtattgattcgtga--tatttcctgtagAGAAAAACAAGCAAAAGCGAAGCGCTTGACTCGTTTCAGTGTTGAATTAAGCAGACCGGTCGATAATATTAATGATTTTGTAAAAGCGCAGAAGGGCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaatgattaggtatgttgcctgttggcgttactcatgaagcattttgtgcagGGAGGAACAAGCAAAAGCCAAGCGGCTGGCTCGTTTCCATGTTGAATTAAGCAGGCCAGTACAAAATACTAATGATTTTGTGAAAACAGTTAAAAGCTCT
 aattaat  putative branch site (score: 3)
     atgatta  TA-rich tract