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gtaagtattattaattgtctcccctccctttctatctcttcttcatctacgcatttccaagccttccatctctccgtggactcgctgcaggactaggatcgaaggcattccataactcaaaagttgtttacacctgtagtttgctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG
species | Zea mays |
transcript | GRMZM2G426275_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|76285204|gb|DV024772.1|DV024772
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211526749|gb|FL258558.1|FL258558
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAACCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|71439957|gb|DR821007.1|DR821007
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211526744|gb|FL258553.1|FL258553
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211526751|gb|FL258560.1|FL258560
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211529736|gb|FL258562.1|FL258562
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|148986617|gb|EE030388.2|EE030388
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|74244431|gb|DT652345.1|DT652345
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211529737|gb|FL258563.1|FL258563
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|149082839|gb|EE172063.2|EE172063
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211526745|gb|FL258554.1|FL258554
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211529742|gb|FL258568.1|FL258568
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211529741|gb|FL258567.1|FL258567
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211529739|gb|FL258565.1|FL258565
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211526748|gb|FL258557.1|FL258557
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|211526750|gb|FL258559.1|FL258559
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
genomic: TGCGCCTCTTTGCTACTCAGTCCCATTATGCGGACCGTCTTGCGGAAGCAgtaagtatta ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
tcgaaggcattccataactcaaaagttgtttacacctgtagtttgctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG
ccataac putative branch site (score: 3)
tttgctcc putative PPT
aaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattattaattgtctcccctccctttctatctcttcttcatctacgcatttccaagccttccatctctccgtggactcgctgcaggactaggatcgaaggcattccataactcaaaagttgtttacacctgtagtttgctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG