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gttgttcacagtttagcaactcgtgaaattagtgtgtgcattttcttttcctttttcgaatgactttgtgaattttctatcattattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACACCATTGCTGACAACCCAAAGGAATCCTCAACAGTGAAGAGATTCTG
species | Zea mays |
transcript | GRMZM2G425986_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|71323508|gb|DR798415.1|DR798415
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|71299540|gb|DR785778.1|DR785778
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|91874808|gb|EB404765.1|EB404765
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|76285023|gb|DV024591.1|DV024591
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGEST: gi|71441857|gb|DR822907.1|DR822907
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTG
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|78090907|gb|DV519281.1|DV519281
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|76926659|gb|DV170957.1|DV170957
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: CATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTNCA-CGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAEST: gi|71323967|gb|DR798666.1|DR798666
genomic: CATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTT-CAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTA
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|78103468|gb|DV521896.1|DV521896
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|74245470|gb|DT653384.1|DT653384
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|76920658|gb|DV168270.1|DV168270
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|71446168|gb|DR827218.1|DR827218
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACEST: gi|6865197|gb|AW360547.1|AW360547
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
EST: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAG GTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
genomic: GCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttcaca ... attattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTAC
tgcattttcttttcctttttcgaatgactttgtgaattttctatcattattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACACCATTGCTGACAACCCAAAGGAATCCTCAACAGTGAAGAGATTCTG
aattttctatcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttcacagtttagcaactcgtgaaattagtgtgtgcattttcttttcctttttcgaatgactttgtgaattttctatcattattgtagGTTGTCCCAGTTGTGGATGGAAATGTGATACGAGTCATCAGCAGGCTTTACACCATTGCTGACAACCCAAAGGAATCCTCAACAGTGAAGAGATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA