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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattagatttccattatcccccgtaaaccaaacacagcctatagatgagctaacaagctttagttctcttgcgtattttcctgatatcgatatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTGTGGCTTCCTC

Basic information

species Zea mays
transcript GRMZM2G422938_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149104327|gb|EE289772.2|EE289772
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAC                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|149089899|gb|EE179185.2|EE179185
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|148947022|gb|EC892319.2|EC892319
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|211338713|gb|FL158147.1|FL158147
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGGTGGAGTATTTTGGAGGA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGG-TGGAGTATTTTGGAGGA
EST: gi|47962573|gb|CN845282.1|CN845282
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|93014248|gb|EB639768.1|EB639768
EST:     ATGGAATCCTCAAGAATGGAAGGGAAATCCCATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGGGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|89761789|gb|DY689662.1|DY689662
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|91051790|gb|EB162208.1|EB162208
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|211372983|gb|FL340766.1|FL340766
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTTACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|31612368|gb|CD568990.1|CD568990
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|50331881|gb|CO527007.1|CO527007
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAA
EST: gi|18166002|gb|BM335841.1|BM335841
EST:     ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG                         GCTTTTAACTGGGAATCCAATAAGCACAACTGG-GGAGT
genomic: ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGgtgagaattt ... tatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagctaacaagctttagttctcttgcgtattttcctgatatcgatatgtgttagGCTTTTAACTGGGAATCCAATAAGCACAACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTGTGGCTTCCTC
                            tatttt  TA-rich tract