Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaatagtaatagtcggtcattgctctaaggtctaagcttatgggttctcatgttgcatctatttattggtttccttggtctgttaactgatggatttagGCACTTCTTGAATACGAAAAACACAAAGTCCGGACTGGTCAGCTTCAGATACCACCGCCTGGTTTACCACAGCCTAGTGGTGCTGACCGTGAG

Basic information

species Zea mays
transcript GRMZM2G421899_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421899_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g48370.2 (Oryza sativa), 3'ss of exon 4
gtaatagtaatagtcggtcattgctctaaggtctaagcttatgg-gttctcatgttgcatctatttattggtttccttggtctgttaactgatggatttagGCACTTCTTGAATACGAAAAACACAAAGTCCGGACTGGTCAGCTTCAGATACCACCGCCTGGTTTACCACAGCCTAGTGGTGCTGACCGTGAG
| |||| || ||      ||||  | |||| |   |    ||    |  | |||     | |  |  ||| |||  |   | |  |  || ||  | |||||||||||| || || |||||| |||||||||| ||||| ||||||||  |||||  | ||| ||||||||||||| ||||| ||| |||||||
ggaata-tagtacagaagcattattgtaagcttagattccatcccatatttatgcattgttttctgcttgatttgttaatttttgtttctcattaacttagGCACTTCTCGAGTATGAAAAATACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTACTGGCCGTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcatgttgcatctatttattggtttccttggtctgttaactgatggatttagGCACTTCTTGAATACGAAAAACACAAAGTCCGGACTGGTCAGCTTCAGATACCACCGCCTGGTTTACCACAGCCTAGTGGTGCTGACCGTGAG
            atctatttatt  TA-rich tract