1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggttacatgcatcccttgtccatactaaatccacgcttattcaaatagatgttgtttcaaacgtgaatactgaagtgaatgttctgtattatttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGATGATGATCTGCTAGAGATGGAGCAATGCCGTGAGCTAGTCGTAGCTTCT
species | Zea mays |
transcript | GRMZM2G421791_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|71439406|gb|DR820456.1|DR820456
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|21760101|gb|BQ635642.1|BQ635642
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: ATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|26559312|gb|CA831547.1|CA831547
genomic: ATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|149105943|gb|EE291571.2|EE291571
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|148987277|gb|EE031113.2|EE031113
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|87156073|gb|DY400862.1|DY400862
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|149097873|gb|EE183807.2|EE183807
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGAEST: gi|149087531|gb|EE176929.2|EE176929
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGG CTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACAAATCTTTCAACATTAATGAGTCAATGACTGTCCACTGTGGgtaggttaca ... tttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
agatgttgtttcaaacgtgaatactgaagtgaatgttctgtattatttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGATGATGATCTGCTAGAGATGGAGCAATGCCGTGAGCTAGTCGTAGCTTCT
ttatttct CT-rich tract
tgtattatttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttacatgcatcccttgtccatactaaatccacgcttattcaaatagatgttgtttcaaacgtgaatactgaagtgaatgttctgtattatttctatcagCTTTGTTAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGATGATGATCTGCTAGAGATGGAGCAATGCCGTGAGCTAGTCGTAGCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA