1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcaaatatatgttgtttacatcatgtcggcttttgatatatggaattaccaatgattggctcacgactgttaacactaattttatcatggttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAACAAACGTATAATGGCATAAAAGATGTTTTCAAGACTGTTTACAAGGAAG
species | Zea mays |
transcript | GRMZM2G420119_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATTAGACTTGGCTAGAACCAAGCTGGCATACCAG GTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAAEST: gi|149013497|gb|EE042998.2|EE042998
genomic: CCATTAGACTTGGCTAGGACCAAGCTGGCATACCAGgtactgtcta ... ttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
EST: CAAGCTGGGATTCCAG GTTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTTTGGTCAACAEST: gi|74234934|gb|DT642848.1|DT642848
genomic: CAAGCTGGCATACCAGgtactgtcta ... ttgctccaagG-TTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACA
EST: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAG GTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAAEST: gi|71441966|gb|DR823016.1|DR823016
genomic: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAGgtactgtcta ... ttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
EST: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAG GTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAAEST: gi|149060805|gb|EE157256.2|EE157256
genomic: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAGgtactgtcta ... ttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
EST: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAG GTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAAEST: gi|31349393|gb|CD433750.1|CD433750
genomic: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAGgtactgtcta ... ttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
EST: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAG GTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAAEST: gi|67016215|gb|CO444964.1|CO444964
genomic: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAGgtactgtcta ... ttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
EST: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAG GTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
genomic: TTTTGTGTACATACCCATTAGACTTGGCTAGGACCAAGCTGGCATACCAGgtactgtcta ... ttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAA
ttaccaatgattggctcacgactgttaacactaattttatcatggttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAACAAACGTATAATGGCATAAAAGATGTTTTCAAGACTGTTTACAAGGAAG
cactaat putative branch site (score: 64)
ttgctcc putative PPT
ttaacactaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaatatatgttgtttacatcatgtcggcttttgatatatggaattaccaatgattggctcacgactgttaacactaattttatcatggttgctccaagGTTTCAAATGTTGGCCAAACTGGTAATGCTTTGGGAAATTCTGGTCAACAACAAACGTATAATGGCATAAAAGATGTTTTCAAGACTGTTTACAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -tgttgtt
- - - - - - - - - - -catgtcg
- - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - -atgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacta