1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcatctaggtctaatcattaaggaatactaatgtttttgcgctgtcagatccttttaactattaatttatttggtgaatttgtcactttcacctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGGATGGCTTACTTAGAGTTCATAAAAGAATAACTGATAGTTCAGATGGTG
species | Zea mays |
transcript | GRMZM2G417223_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCGCATCANAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCA GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGEST: gi|93016633|gb|EB642153.1|EB642153
genomic: AAGCGCGCATCAAAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCAgtaagtgcct ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
EST: AAGCGCGCATCAAAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCA GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGEST: gi|76011885|gb|DT939055.1|DT939055
genomic: AAGCGCGCATCAAAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCAgtaagtgcct ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
EST: AGCGCGCATCAAAATACTTGATGGCCCACCTGGGTGTACCAGAAAGAGCA ATAATGATTTTCAGCAGAGGATGAACCAGATGCACCTCTCTCTCCCGCTATEST: gi|74237391|gb|DT645305.1|DT645305
genomic: -GCGCGCATCAAAATACTTGATGGCCCACCTGG-TGTACCAGAAAGAGCAgtaagtgcct ... acctttgaagGTAATGATTT-CAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTAT
EST: AAGCGCGCATCAAAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCA GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGEST: gi|93015086|gb|EB640606.1|EB640606
genomic: AAGCGCGCATCAAAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCAgtaagtgcct ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
EST: AAGCGCGCATCANAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCA GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
genomic: AAGCGCGCATCAAAATACTTGATGGCCCACCTGGTGTACCAGAAAGAGCAgtaagtgcct ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
cagatccttttaactattaatttatttggtgaatttgtcactttcacctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGGATGGCTTACTTAGAGTTCATAAAAGAATAACTGATAGTTCAGATGGTG
tattaat putative branch site (score: 62)
tcactttcaccttt putative PPT
ttttaactattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctaggtctaatcattaaggaatactaatgtttttgcgctgtcagatccttttaactattaatttatttggtgaatttgtcactttcacctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGGATGGCTTACTTAGAGTTCATAAAAGAATAACTGATAGTTCAGATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG