1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagtatttatctccactattttctcctggtgttgttaaactgggatgactattatcttatctgctacttgaacatgtaaaattaaaaacatgataaatcttcttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG
species | Zea mays |
transcript | GRMZM2G413857_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT TTACTTGACGAGAGGEST: gi|32804882|gb|CD957118.1|CD957118
genomic: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGTgttagtattt ... ttctgtgcagTTACTTGACGAGAGG
EST: GATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT TTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTEST: gi|19351457|gb|BM895989.1|BM895989
genomic: GATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGTgttagtattt ... ttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATT
EST: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT TTACTTGACGAGAGGCAGGGAGCTAATGTCTGGCGGTTCCTTCAGGCAATTEST: gi|87152801|gb|DY397590.1|DY397590
genomic: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGTgttagtattt ... ttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATT
EST: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT TTACTTGACGAGAGGCAGGGAGCTAATGTCTGGCGGTTCCTTCAGGCAATTEST: gi|67023933|gb|CO452682.1|CO452682
genomic: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGTgttagtattt ... ttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATT
EST: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGT TTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATT
genomic: GTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCAGAAGTgttagtattt ... ttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATT
tatctgctacttgaacatgtaaaattaaaaacatgataaatcttcttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG
tcttcttctgt CT-rich tract
aacatgtaaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatttatctccactattttctcctggtgttgttaaactgggatgactattatcttatctgctacttgaacatgtaaaattaaaaacatgataaatcttcttctgtgcagTTACTTGACGAGAGGCAGGGAGCTAACGTCTGGCGGTTCCTTCAGGCAATTAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT