1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaggactattgactctgctaccaacatttgagtgtcaaaagttcaatctcagaagctattgtaaatcatctttttaatttagctcaaagtggttagtatccaaccatacatgtacatcgatgttgatgtctttttgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACAAGAAATCTGTTGTCCCTTTAATTGAGGAATATTTCAGCAATGGGGATG
species | Zea mays |
transcript | GRMZM2G412470_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211130257|gb|FL407388.1|FL407388
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAAACTACEST: gi|211521515|gb|FL409901.1|FL409901
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211398118|gb|FL400635.1|FL400635
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211084566|gb|FL380767.1|FL380767
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|149089469|gb|EE178714.2|EE178714
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211296724|gb|FL392421.1|FL392421
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|13125950|gb|BG316625.1|BG316625
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211392721|gb|FL395700.1|FL395700
genomic: ACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211530400|gb|FL405488.1|FL405488
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|89247284|gb|DY619070.1|DY619070
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211209589|gb|FL396501.1|FL396501
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211045601|gb|FL405927.1|FL405927
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|89252724|gb|DY624510.1|DY624510
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|211221316|gb|FL377252.1|FL377252
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACEST: gi|91053847|gb|EB164265.1|EB164265
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
EST: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAG GAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
genomic: ATGCAGAGGCATGCCTTGATCGAAATGATCCAAATTATGACAGTGGTGAGgtaaggacta ... tgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTAC
tggttagtatccaaccatacatgtacatcgatgttgatgtctttttgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACAAGAAATCTGTTGTCCCTTTAATTGAGGAATATTTCAGCAATGGGGATG
tgttgat putative branch site (score: 104)
tctttttgctactc CT-rich tract
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggactattgactctgctaccaacatttgagtgtcaaaagttcaatctcagaagctattgtaaatcatctttttaatttagctcaaagtggttagtatccaaccatacatgtacatcgatgttgatgtctttttgctactcagGAGCCATATGAGTTAGTTGAGGCCCCTGTTTCAACCCCACTAGAAGACTACAAGAAATCTGTTGTCCCTTTAATTGAGGAATATTTCAGCAATGGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA