1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccgaatcctcaaaattttatgagccacatacactgaagttactgatagttccaaaggttcattgatggtgatgaaggctaagatactgttcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGTTAGTGTTACTCCAGAGAAGCAGAAATGTGGATAACTTAACTGGACAAT
species | Zea mays |
transcript | GRMZM2G408989_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAG ATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGEST: gi|91871428|gb|EB401415.1|EB401415
genomic: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAGgtgatgtttt ... tcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAG
EST: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAG ATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGEST: gi|60342889|gb|DN209862.1|DN209862
genomic: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAGgtgatgtttt ... tcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAG
EST: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAG ATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGEST: gi|60344375|gb|DN211348.1|DN211348
genomic: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAGgtgatgtttt ... tcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAG
EST: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAG ATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGEST: gi|18165355|gb|BM335194.1|BM335194
genomic: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAGgtgatgtttt ... tcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAG
EST: CTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAG ATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGEST: gi|32912106|gb|CF016918.1|CF016918
genomic: CTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAGgtgatgtttt ... tcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAG
EST: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGAGG ATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACA
genomic: CCGCGTTCCTGCTCGCGCTGATGTTCCACGACCGGTTCACCTTCCGAGA-Ggtgatgtttt ... tcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACA
atagttccaaaggttcattgatggtgatgaaggctaagatactgttcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGTTAGTGTTACTCCAGAGAAGCAGAAATGTGGATAACTTAACTGGACAAT
ctgttccttt CT-rich tract
taagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccgaatcctcaaaattttatgagccacatacactgaagttactgatagttccaaaggttcattgatggtgatgaaggctaagatactgttcctttgcagATATGCTGGGCATTTTCGATCTATTTAGAGGCAGTGGCAATTCTCCCACAGTTAGTGTTACTCCAGAGAAGCAGAAATGTGGATAACTTAACTGGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC