1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttatttgttctagcggaactccaagttgatagatgtcctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
species | Zea mays |
transcript | GRMZM2G408242_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|5860411|gb|AW011633.1|AW011633
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|37373889|gb|CF623269.1|CF623269
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTNGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|60339571|gb|DN206544.1|DN206544
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|32930869|gb|CF035681.1|CF035681
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|78544078|gb|DV621576.1|DV621576
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: TATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|60352672|gb|DN219645.1|DN219645
genomic: TATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|22549285|gb|BU101486.1|BU101486
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|5739678|gb|AI947473.1|AI947473
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|211507205|gb|FL420316.1|FL420316
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|6760625|gb|AW324724.1|AW324724
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|20301653|gb|BQ164596.1|BQ164596
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|148990758|gb|EE032169.2|EE032169
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|78022288|gb|DV490675.1|DV490675
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTGEST: gi|6742399|gb|AW313214.1|AW313214
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
EST: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACA GTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
genomic: GCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatcc ... ctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
gctttcatttatttgttctagcggaactccaagttgatagatgtcctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
agttgat putative branch site (score: 5)
tcctatct putative PPT
atttatttgttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttatttgttctagcggaactccaagttgatagatgtcctatctgcagGTTGTTGCAGGATGCTGGCATAACAGACCTGACACAATTTGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG