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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattgattttcatgggtgaaatgtagctttgtacttgtgcttggtaactagacgtatggactatacttatacttcttttgttgtcctggaagATACGGGACTCCATCCATGCACTTTTTTCGAACAGAGAATGTTTTACACTTGTGCAACCTGTGAACAATGAGAAAGATCTCCAACGTCTTGATCAACTTC

Basic information

species Zea mays
transcript GRMZM2G406890_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406890_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g48860.1 (Oryza sativa), 3'ss of exon 2
--------------------------gtatgattgatt---ttcatgggtgaaatgtagctttgtacttgtgcttggtaactagacgtatggactatacttatacttcttttgttgt-cctggaagATACGGGACTCCATCCATGCACTTTTTTCGAACAGAGAATGTTTTACACTTGTGCAACCTGTGAACAATGAGAAAGATCTCCAACGTCTTGATCAACTTC
                          | || ||| ||    ||    |||| ||      ||   |    |  ||  |||| | |  |||     |    |  |  | || |  |||  ||| ||||||||||| ||||||| |||||||||| || |  |||||||  |||||||||||| ||||||||| |||||||||||||| || || |||||||||||||
gtatggcagcatgagtttcttgcagtgcattattcataaaattatctggtgcaacaatctttctgatgcatcatttttaac-atatctataagaaactgatgcatatgttgtaatgtatctgtaagATACGGGAGTCCATCCGTGCACTTTTTCCGGATCGAGAATGCATTACACTTGTGCGACCTGTGAATAATGAGAAAGATCTTCAGCGCCTTGATCAACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggtaactagacgtatggactatacttatacttcttttgttgtcctggaagATACGGGACTCCATCCATGCACTTTTTTCGAACAGAGAATGTTTTACACTTGTGCAACCTGTGAACAATGAGAAAGATCTCCAACGTCTTGATCAACTTC
    tggtaac  putative branch site (score: 2)
                                  cttcttttgttgtcct  putative PPT
                        tatacttata  TA-rich tract