1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattatgagtgtttttgttatgtttaaagtttactcttatggtggttatgccagcctacatctcaacttctgattcttgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGAATTGCCAACAGTTGCTTTTAAGTGCAATACCCAGGAGCAGAGGACCAA
species | Zea mays |
transcript | GRMZM2G403149_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|211301543|gb|FL314591.1|FL314591
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGTAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|18384781|gb|BM417980.1|BM417980
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|211260723|gb|FL355576.1|FL355576
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGTAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|148960324|gb|EE153581.2|EE153581
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|149113076|gb|EE295842.2|EE295842
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: AGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTNCA-CAAGATAG ATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|211455052|gb|FL323064.1|FL323064
genomic: AGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCT-CAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGTAGAGAAATGGCTTACATATCTAAGAGAAGEST: gi|18384780|gb|BM417979.1|BM417979
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
EST: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAG ATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
genomic: TAGGAAGGCTGATCCAAGTAAACGGATTGTACTACTTCTCAACAAGATAGgtattatgag ... tgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAG
actcttatggtggttatgccagcctacatctcaacttctgattcttgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGAATTGCCAACAGTTGCTTTTAAGTGCAATACCCAGGAGCAGAGGACCAA
ttctgat putative branch site (score: 78)
ttctt CT-rich tract
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatgagtgtttttgttatgtttaaagtttactcttatggtggttatgccagcctacatctcaacttctgattcttgaattctagATCTTGTTCCCAAGGAGGCGGCAGAGAAATGGCTTACATATCTAAGAGAAGAATTGCCAACAGTTGCTTTTAAGTGCAATACCCAGGAGCAGAGGACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA