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gtatgtattgcttctgacccctgtgtttattctgcattgtggatggtcgaaattaactgtggtgttctgcatgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTGAAGGTGACACTGCAAAGCTTGAGATTCAG
species | Zea mays |
transcript | GRMZM2G399073_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTEST: gi|56538364|gb|CX054073.1|CX054073
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGAAAGTTCTGGGTEST: gi|149004856|gb|EE039364.2|EE039364
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTEST: gi|149073272|gb|EE161562.2|EE161562
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTEST: gi|24767582|gb|CA402726.1|CA402726
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGGTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTEST: gi|31360086|gb|CD444443.1|CD444443
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCGGGGGCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTEST: gi|148964727|gb|EC905993.2|EC905993
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTEST: gi|149112828|gb|EE295636.2|EE295636
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
EST: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGAT GCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
genomic: ACAGCAACAAGGATATCTTCCTGAGGGAGCTCATATCCAATGCCTCTGATgtatgtattg ... atgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGT
tttattctgcattgtggatggtcgaaattaactgtggtgttctgcatgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTGAAGGTGACACTGCAAAGCTTGAGATTCAG
aattaac putative branch site (score: 2)
aaattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattgcttctgacccctgtgtttattctgcattgtggatggtcgaaattaactgtggtgttctgcatgtctgtagGCATTGGATAAGATCAGGTTCCTTTCCCTTACTGATAAGGAAGTTCTGGGTGAAGGTGACACTGCAAAGCTTGAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG