Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatgaactttatgtgattgtaatattttgattttatgtggtcaaatatatggaccgacacggtccgatgaaggcacggtgtggtttaggaccgggttaggccactgtttttacacttcggactgacacaaagtgacaagctgtttatggttctcagGTTACATAGGCCCGGTTTCCTTTTTAAATACTATGCTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGACCTTGTATACG

Basic information

species Zea mays
transcript GRMZM2G398107_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G398107_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 3'ss of exon 4
gtaagttatgaactttatgtgattgta-atattttgattttatgtggtcaaatatatggaccgacacggtcc-gatgaaggcacggt----gtggtttaggaccgggttaggccactgtttttacacttcgga----------------ctgacacaaagtgacaagctgtttatggttctcagGTTACATAGGCCCGGTTTCCTTTTTAAATACTATGCTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGACCTTGTATACG
|| |   ||||  | |   | ||| || |  ||   ||  | |||     || | |    |   |  | | | | ||| |      |     |||  |     | |||||| |||     |||  ||| |  |                 | ||| ||||| ||| | ||||||||||  |||||||| || ||  | ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
gtga---atgacttcttcttcattttacactttcccatcctttgtcaaagaaaaaaaaagctctcctgtttctggtgatgttttcatcacaatggcatgcataccggttag-ccatctcctttgtactgccaaataaggtttgtgtgttttaacaaaaagtaacatgatgtttatggtattcagGTTATATTGGATCTGTTTCCTTTTTAACTACTGTACTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGATCTTGTATATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgtttttacacttcggactgacacaaagtgacaagctgtttatggttctcagGTTACATAGGCCCGGTTTCCTTTTTAAATACTATGCTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGACCTTGTATACG
                  gactgac  putative branch site (score: 2)
                                                ttctc  putative PPT
     tttttaca  TA-rich tract