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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttcagtttctgaacactagtattggccaatatgtcttaacttgttagccccatctgattgctgaaaagtctaatttgcattttgtttttgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGGCTAAGCTCGGTGTACCGCAGCCTCCAGGTTGCCAAGTCCGGTGTCAAGA

Basic information

species Zea mays
transcript GRMZM2G394827_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G394827_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57540.1 (Oryza sativa), 3'ss of exon 3
-----gcttcagtt-tctgaacactagtattggccaatatgtcttaacttgttagccccatctgattgctgaaaagtctaatttgcattttgtttttgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGGCTAAGCTCGGTGTACCGCAGCCTCCAGGTTGCCAAGTCCGGTGTCAAGA
     ||| | ||| |||  |||  ||  ||  ||  |||||     | ||       | | |||| |||        |||      |||  ||| |||   ||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||
aagctgctactgttctctctacagcagcttt--cctgtatgtaccttcctgaagaaatc-tttgatagcttgtgctcttaacagctgtttcttttctgc---gcagGTTAGTGACAACTACTACAGGCCAGATCTGACCAAACCGGCTCTTGCAAGGCTTAGCTCAGTGTACCGCAGCCTCCAGGTTGCCAAGTCTGGTGTGAAGA

upper sequence: GRMZM2G394827_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g46430.1 (Oryza sativa), 3'ss of exon 3
-------gcttcagtttctgaacactagtattggccaatatgtcttaacttgttagccccatctgattgctgaaaagtctaatttgcattttgtttttgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGGCTAAGCTCGGTGTACCGCAGCCTCCAGGTTGCCAAGTCCGGTGTCAAGA
         ||   | |||  ||   ||  ||     || |  ||||       | |  ||   | ||| |      | ||||||||  ||   || |||| | ||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||| ||||||| |||| |||||
cctctagtatttcttctctatacggcagctttcctttatgtaccttactgaacaatcatcagtagtttgttc-----tttaatttgctgtta--ttctgcccttcagGTGAGTGACAACTACTACAGGCCTGACCTGACCAAGCCGGCTCTTGCGAGGCTTAGCTCAGTGTACCGCAGCCTCCAGGTTTCCAAGTCTGGTGCCAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37392746|gb|CF633626.1|CF633626
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|18649627|gb|BM498446.1|BM498446
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60352135|gb|DN219108.1|DN219108
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|89247696|gb|DY619482.1|DY619482
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|50323416|gb|CO518542.1|CO518542
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATTTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60346709|gb|DN213682.1|DN213682
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|91048483|gb|EB158901.1|EB158901
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60341855|gb|DN208828.1|DN208828
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|5740488|gb|AI948178.1|AI948178
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32809117|gb|CD961351.1|CD961351
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|30087987|gb|CB886192.1|CB886192
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9742612|gb|BE518760.1|BE518760
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|6031594|gb|AI668494.2|AI668494
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|86466958|gb|DY233328.1|DY233328
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|4804571|gb|AI665594.2|AI665594
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60344451|gb|DN211424.1|DN211424
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60396562|gb|DN229431.1|DN229431
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|37397264|gb|CF635927.1|CF635927
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211372090|gb|FL076478.1|FL076478
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9953964|gb|BE640547.1|BE640547
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|8665876|gb|BE186692.1|BE186692
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32806827|gb|CD959061.1|CD959061
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211004085|gb|FL433379.1|FL433379
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60344773|gb|DN211746.1|DN211746
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|71763102|gb|DR961039.1|DR961039
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211498632|gb|FL475537.1|FL475537
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60399308|gb|DN232122.1|DN232122
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32799164|gb|CD951400.1|CD951400
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTGGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|91877502|gb|EB407459.1|EB407459
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60397312|gb|DN230128.1|DN230128
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|94473610|gb|EB702568.1|EB702568
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|78026395|gb|DV494782.1|DV494782
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9733369|gb|BE512226.1|BE512226
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GATTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagG-TTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAG
EST: gi|91055821|gb|EB166239.1|EB166239
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60359639|gb|DN226612.1|DN226612
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|31557930|gb|CD527142.1|CD527142
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211498633|gb|FL475538.1|FL475538
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|16926566|gb|BM079634.1|BM079634
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60359769|gb|DN226742.1|DN226742
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9255150|gb|BE345618.1|BE345618
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|30306772|gb|CD001445.1|CD001445
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|71448804|gb|DR829854.1|DR829854
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|78077420|gb|DV505854.1|DV505854
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60340037|gb|DN207010.1|DN207010
EST:     CAAGGAGTTCCGCAAGATGGCCAAGGTTGTGAAAAACCAG                         GTTAGTGACAACTAGTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|20300270|gb|BQ163213.1|BQ163213
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211308013|gb|FL101160.1|FL101160
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|37376577|gb|CF624829.1|CF624829
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211374748|gb|FL076486.1|FL076486
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60352621|gb|DN219594.1|DN219594
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|33467200|gb|CF244249.1|CF244249
EST:     TTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATTTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211514565|gb|FL432504.1|FL432504
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|20300560|gb|BQ163503.1|BQ163503
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60396584|gb|DN229453.1|DN229453
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|78113289|gb|DV531681.1|DV531681
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60399099|gb|DN231913.1|DN231913
EST:     AAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: AAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|15082597|gb|BI389281.1|BI389281
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|87153139|gb|DY397928.1|DY397928
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|84969839|gb|DW468254.1|DW468254
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32826107|gb|CD965785.1|CD965785
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211305999|gb|FL101159.1|FL101159
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|60337678|gb|DN204651.1|DN204651
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATTTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|71421266|gb|DR805364.1|DR805364
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|9742818|gb|BE518966.1|BE518966
EST:     ATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: ATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|21843254|gb|BQ703835.1|BQ703835
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTTCTTGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|32807872|gb|CD960106.1|CD960106
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|76926032|gb|DV170693.1|DV170693
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGTTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|94478235|gb|EB707193.1|EB707193
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|30087932|gb|CB886137.1|CB886137
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GCTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|31909339|gb|CD650869.1|CD650869
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|33104000|gb|CF063960.1|CF063960
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCAGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211107225|gb|FL478039.1|FL478039
EST:     CTGTGATGTGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|21891436|gb|BQ744649.1|BQ744649
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTAACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|211175879|gb|FL475293.1|FL475293
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|67013976|gb|CO442725.1|CO442725
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|5608413|gb|AI901990.1|AI901990
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
EST: gi|74241858|gb|DT649772.1|DT649772
EST:     CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAG                         GTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG
genomic: CTGTGATGCGCAAGGAGTTCCGCAAGATGGCCAAGGCTGTGAAAAACCAGgtactagcac ... tgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagccccatctgattgctgaaaagtctaatttgcattttgtttttgccttgcagGTTAGTGACAACTACTACAGGCCTGATCTGACCAAGCCAGCTCTTGCTAGGCTAAGCTCGGTGTACCGCAGCCTCCAGGTTGCCAAGTCCGGTGTCAAGA
                        gtctaat  putative branch site (score: 3)
                                    ttttgtttttgcctt  putative PPT
                                   attttgttttt  TA-rich tract