1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagtggatcttctgggtcggccccttcatcggcgccgccctggctgccatCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCT
species | Zea mays |
transcript | GRMZM2G392975_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACCGGCACCGGCATCAACCCGGCTAGGGAGC-TTGGGCGCCGCCATCAT CTACAACC-GG-GATCATEST: gi|149099303|gb|EE185339.2|EE185339
genomic: CACCGGCACCGGCATCAACCCGGCTAGG-AGCCTTGG-CGCCGCCATCATctacaaccgg ... tggctgccatCTACCACCAGGTGATCAT
EST: ATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCGCCGCCATCAT CTACAACC-GG-GATCATEST: gi|76012460|gb|DT939630.1|DT939630
genomic: ATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCGCCGCCATCATctacaaccgg ... tggctgccatCTACCACCAGGTGATCAT
EST: ATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCGCCGCCATCAT CTACAACCCGG-GATCAT
genomic: ATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCGCCGCCATCATctacaaccgg ... tggctgccatCTACCACCAGGTGATCAT
gtttgcagtggatcttctgggtcggccccttcatcggcgccgccctggctgccatCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCT
ccgccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagtggatcttctgggtcggccccttcatcggcgccgccctggctgccatCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - -ctccatc
- - - - - - - tgccata
- - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgccc