1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagctgtgtgttaggcttatcacgaaggcttgtctccatctatgtagcttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCTG
species | Zea mays |
transcript | GRMZM2G392975_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|60341153|gb|DN208126.1|DN208126
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|161590511|gb|EY962818.1|EY962818
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: CGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|149099303|gb|EE185339.2|EE185339
genomic: CGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGGTCGGCCCCTTCATCEST: gi|9732073|gb|BE510825.1|BE510825
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGG-TCGGCCCCTTCATC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACEST: gi|211493182|gb|FL033666.1|FL033666
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
EST: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCAT TGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
genomic: GCCTTGGCGCCGCCATCATCTACAACCGGGATCATGCGTGGAGCGACCATgtgagtggga ... ttgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTAC
agcttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCTG
ccataac putative branch site (score: 3)
tttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctgtgtgttaggcttatcacgaaggcttgtctccatctatgtagcttgtctccatctgtgccataacctcttcctgtttctatacgattgtttgcagTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGGGCCATCCCGTTCAAGAGCAGGTCTTAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-agctgtg
- - - - - - - - - - - - - - - - -ctccatc
- - - - - - - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccata