1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacgaatagtagcaatcattggtcaggacatgtagcttaatgctatcttgttgttattacatgggtgtcgtaacaccttgccgactgttcataaacgcagGACCTGAGATCTAGAAGGACACAACAGGCAAGGTGGATGTATTCGTAGCTGGTTCAGGCACAGAAG
species | Zea mays |
transcript | GRMZM2G384298_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATAGCTATGAAACCGAAAACAACTGCCAAATGTACATGTTCTGAATCAA GACCTGAGATCTAGAAGGACACAACAGGCAAGGTGGATGTATTCGTAGCTGEST: gi|76925337|gb|DV170387.1|DV170387
genomic: AATAGCTATGAAACCGAAAACAACTGCCAAATGTACATGTTCTGAATCAAgttatgatgc ... ataaacgcagGACCTGAGATCTAGAAGGACACAACAGGCAAGGTGGATGTATTCGTAGCTG
EST: AATAGCTATGAAACCGAAAACAACTGCCAAATGTACATGTTCTGAATCAA GACCTGAGATCTAGAAGGACACAACAG
genomic: AATAGCTATGAAACCGAAAACAACTGCCAAATGTACATGTTCTGAATCAAgttatgatgc ... ataaacgcagGACCTGAGATCTAGAAGGACACAACAG
tcttgttgttattacatgggtgtcgtaacaccttgccgactgttcataaacgcagGACCTGAGATCTAGAAGGACACAACAGGCAAGGTGGATGTATTCGTAGCTGGTTCAGGCACAGAAG
tcgtaac putative branch site (score: 2)
ttgttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgaatagtagcaatcattggtcaggacatgtagcttaatgctatcttgttgttattacatgggtgtcgtaacaccttgccgactgttcataaacgcagGACCTGAGATCTAGAAGGACACAACAGGCAAGGTGGATGTATTCGTAGCTGGTTCAGGCACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -agtagca
- - - - - - - - - - - - - -acatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgcc