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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacacatcgcggtgtttctctgattgtaatgtcgactggaatggattgctgtcctcaattgttctgacgggactagggaatctggtgcggtgttgttgcagGAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGCGGTGGCAGGGGTGGCAAGCCGTCGTTTCTCAAGTCCAGCATCACTACGC

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105999|gb|EE291640.2|EE291640
EST:     AGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCTTCCTCCGG                         GAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGC
genomic: AGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCTTCCTCCGGgtacacacat ... gttgttgcagGAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtcctcaattgttctgacgggactagggaatctggtgcggtgttgttgcagGAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGCGGTGGCAGGGGTGGCAAGCCGTCGTTTCTCAAGTCCAGCATCACTACGC
               ttctgac  putative branch site (score: 2)
          aattgtt  TA-rich tract