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gtaagataatacataccagcttacagggaactttgcttttttccccacacacatcatactgatatcagctaatagtgggttgtaacttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATGTTAGAGTGGCTAAGCTACTTGGAGGTGGTTTGCACAATTCTTCTGTGG
species | Zea mays |
transcript | GRMZM2G381744_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATEST: gi|148963192|gb|EE014169.2|EE014169
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAT
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATEST: gi|32808489|gb|CD960723.1|CD960723
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAT
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAEST: gi|211014871|gb|FL418131.1|FL418131
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTA
EST: CAAGCAAACAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATEST: gi|22491636|gb|BU051559.1|BU051559
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAT
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATEST: gi|148938415|gb|EC882734.2|EC882734
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAT
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTNCA-GTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAEST: gi|149014798|gb|EE044495.2|EE044495
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATT-CAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAA
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAEST: gi|87153402|gb|DY398191.1|DY398191
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAA
EST: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGAT GCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAT
genomic: CAAGCAAGCAGTTTGGCCAGGAGGATATGCTGTGCCCTCTTGTGGCTGATgtaagataat ... acttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAAT
tttccccacacacatcatactgatatcagctaatagtgggttgtaacttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATGTTAGAGTGGCTAAGCTACTTGGAGGTGGTTTGCACAATTCTTCTGTGG
ttgtaac putative branch site (score: 84)
ctttttt CT-rich tract
ttgtaactttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataatacataccagcttacagggaactttgcttttttccccacacacatcatactgatatcagctaatagtgggttgtaacttttttagGCCTGCATTCAAGTTTGCCCCAAAAATCCTGCAAACTTTAATGTTGACAATGTTAGAGTGGCTAAGCTACTTGGAGGTGGTTTGCACAATTCTTCTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG